rs38384957 SNP Detail

Summary

• ID
  rs38384957
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:146186385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATACTTT ATAGCCAGCA
  GGATGCAGAA AACACTTCCC AACAGTTCTT CAAACCTTTG AAGTATGGAT TAAAATTGTT
  TTAAATTACA TTTTCTATTT ATGTTATGTG TGTGGGAGTG ACTTGTGTGG TCCTAAACCA
  AAAGTTTTAT TATAAAATGT CAGGAAACAT CATTATATCT AGAACCAATT TGGCCTTACA
  K
  AATAAATACA AGAAGTTCTG CCAAATCTGT AGGTAGATGT TTTGCCTTTG AGCACTGATG
  ACACCAGACC TATAATATAT TCTATTTTAC ATTAATTCCT TTATTTGTTT ATATGTCCAC
  TTGTATTTAT CCATGAGGAC AGTAGTTGCT CCTTGCATGA ATGCTAATTT TCTGGGGAGC
  CCATCCCCTG AAGCAATGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51539010	NES14871282	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38384957					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539010	NES14871282	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146186385 () rs orientation: forward

Symbol	Name	Function Class
Cdk8	cyclin dependent kinase 8	Intron
Gm15739	predicted gene 15739	153 bp downstream
Rr624627	regulatory region 624627	279 bp distal
Rr624628	regulatory region 624628	548 bp proximal