rs38335057 SNP Detail

Summary

• ID
  rs38335057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:81928782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAAAC AAACAAGAGT
  CCTACTGTTG AGGCTTTATT CTGAGAGAAT AATGGTCCTG TGTATTCCCT CCCCTCCCTC
  TCCCCATTTC TTCCTCCTTC CTCACCGGTC TCACATTAGC TCTGAAGAAG GAAAAATGTC
  ACCACACTCC AAGTTCCAAG AAAGACAGTT CTGGGGAGCT CTAAAGGTAA GCAGAGTACT
  R
  TTCTTTAAAT GTGTCTATAT TAATCTTTGC AGCTAAATAA TATTGTTGAA CCACTCCACT
  CTGCCACTAC AGCACAAAAC ACTCACAGGC TATCAGTATG CAAGCAAATG AACTGTGTTT
  GGATAAACTT TGCTTAACAA CACCAAAATT TGAATATCAC ATAATTTTCA CAGGACAGCC
  AGGGCTACAC AGAGAAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51348217	NES13741301	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38335057					SNP	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348217	NES13741301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81928782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gcfc2	GC-rich sequence DNA binding factor 2			Intron
				Noncoding-Transcript-Variant
Rr632565	regulatory region 632565			1893 bp proximal