rs38329069 SNP Detail

Summary

• ID
  rs38329069
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83920698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACTTAT TTGGAAGTTC
  AATGTACAAG CCTCTCTGCC TTATTATTTA AATGTTCATT GATTTTAAAA GTGAATAACA
  TTTACTCTTT CTCCATCCTG AACTACGGTT ACAGAAGCGG ACAAAATAAT GTCGAGCAGG
  GAAGAGCACA GACACAGGGA GCAGGGGCTG AAGCATCCAC CCTGCTCTAA CCTGGCTGTG
  R
  GTTCCGGACA GCTTCTCCTC CCAGAACACG ATAAAGCCAC ACCAACACAC ACAATCTACC
  AGATTCAAAC TCCAGTGAGG AAAATGCCTT GCCTAAAATG TCGACTGCAA AAGTACCTTT
  GTAAAGATGA ACAGCAAGCA TACAGCCTAA CTTGATCAGT TACCCTCTCT CCACAAATGG
  TTCTATGGAC AAAGCATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51569273	NES14674678	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38329069					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569273	NES14674678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83920698 () rs orientation: forward

Symbol	Name	Function Class
Rr578955	regulatory region 578955	1325 bp distal
Tmem131l	transmembrane 131 like	Intron