rs38304964 SNP Detail

Summary

• ID
  rs38304964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:45887562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCGGCCG GCCACACAAC
  AGTCCTCACA TGGAGTCCTC TAGGAGTTAC TCAAACAGCA GACAAGGACA GTAGAGGCTG
  GCTGCGCCTA CATTCTGTTC TAAAGGTTCA CTATTCCCCT CAAATAGCAA GGAGATAGAG
  ATGAAGAAGG CAGACAGCCT GATTCATGTA CTCTCCTCCT GTCTGGAGGA AAGTTCTCTA
  R
  GGTTTTGTGT TAGAAAGGCC AATGATAGGC AGCTTGCCTT TGTGATGCTG TCTATTAACA
  AGTGAGCTCA TGGACTGGAC CCAGGCAGGG GTCGAGGAAG CTCTACAGGT GCCCACAATA
  GATCACACAC AGTCTTCTCA GCTCCTACTA GTATCTCTGA GAATACAGGC TAGCTAGGTA
  AGAGCCACAT AAAAATGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50833116	NES13519706	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	A		G	A	A	G		A
ss325821543	CHEV_19_45973613	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38304964					SNP	G	G	A	G	G	G	G	G	G	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50833116	NES13519706	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:45887562 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Armh3	armadillo-like helical domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr548612	regulatory region 548612			1808 bp proximal