rs38294417 SNP Detail

Summary

• ID
  rs38294417
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62302308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAAGAAA AAGCCAAAAA
  CAAACAAACC AAAAAACCAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAG AAAAAGAAAA
  CCAAAAACCA AACAAAAAAA TCCCCAACAC ACACACACAA AATCAACCAA ACAACCAAAC
  ACCGCTCCCT CTTCCCCAGC AATCCCCCCA TCCCAGTCCC TAGTCCAGCT TATTAAGTCA
  W
  TGAATTACTT TCTTAGATTT CTCTGACAGT CAGGTCTTTG AGGAGGAGTA ATTTTTAGCC
  TCCAGGTCCC AGGTTTAGCA GTCGTCTTTA GACTCTAGAG CAGCTGATAC TTTGGAGCAG
  GTTTTAAGCA GTACTCTTGT TGAGGAGGGG TTGGTTTGTC TCGGCTGTGT TCACGCCGTC
  CCTGCCTTTG AACCTTCGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51531923	NES14683649	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38294417					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51531923	NES14683649	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62302308 () rs orientation: forward

Symbol	Name	Function Class
Arhgef26	Rho guanine nucleotide exchange factor 26	Intron
Rr577516	regulatory region 577516	264 bp distal
Rr577517	regulatory region 577517	592 bp proximal
Rr577518	regulatory region 577518	1212 bp proximal
Tssr889	transcription start site region 889	1535 bp upstream