rs38257029 SNP Detail

Summary

• ID
  rs38257029
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34452290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC AACTATCATG AGCTAAAATG
  S
  ATAAATGGGA CATACAGCTT GCTAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51273211	NES13779293	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38257029					SNP	C	C	C	C	C	C	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51273211	NES13779293	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34452290 () rs orientation: forward

Symbol	Name	Function Class
Bpgm	2,3-bisphosphoglycerate mutase	1001 bp upstream
Cpgi17283	CpG island 17283	771 bp proximal
Rr399609	regulatory region 399609	678 bp upstream
Rr628315	regulatory region 628315	1621 bp distal
Rr628316	regulatory region 628316	1117 bp distal
Rr628317	regulatory region 628317	362 bp proximal
Rr628318	regulatory region 628318	863 bp proximal
Tssr55509	transcription start site region 55509	931 bp upstream