rs38138778 SNP Detail

Summary

• ID
  rs38138778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81964942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTTATA AAGCATTGCG
  AAGCTGAGGG TAAGCTCCCT GGAGATGCCA AGCAGAGAAC CCAGTGTTTT TGTGGCCTAA
  ATGGAAGTCA CAGAAAGTCC TGGCTGTCAT GCCAAGAACC AGGCCACAAC CCGCCCCATG
  GAGGAGGAGC CAGTAACCAA AGGCAGCAGA GGTGGCACAC AGCTCCAATT TAGGATAGTG
  Y
  CAGTTGCCAT CTGAACAGTG GCTGAGGGTA TTTGGGGAAG GCTCTTTCTA ATCCCAATGA
  CTGCTTTATT TGATAGACAG TATTAAAGCT ACTTTATAGA CAAGGAAGGA GAAGGTTACT
  CGAACAGTTA AGAGCCGCAC AGCTCGTTAG CGGAGTTGGG GCTCAGGACC TTAAGGCTCA
  GGCAATTTCT GTTCCCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51347831	NES13740467	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38138778					SNP	T	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51347831	NES13740467	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81964942 () rs orientation: forward

Symbol	Name	Function Class
Gm20383	predicted gene, 20383	within coordinates
Gm44202	predicted gene, 44202	1186 bp upstream
Rr632571	regulatory region 632571	703 bp distal
Rr632572	regulatory region 632572	783 bp distal
Rr632573	regulatory region 632573	364 bp distal