rs38129407 SNP Detail

Summary

• ID
  rs38129407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:146184509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTTGCCT GTCTCACAGG
  AGAATGAACC ACAAGCACTC ATAGTTTTCC TTAATGAAAG TTGTACTTCA GTTATGGATA
  ACGCTGGCTA CTAGTTTACT TTTAAGCATT TAAAACACAG TTTTGATTTG TCATGTTGTA
  CTAAGTAGCC AAATCCTAGT TACTTTCATG GAGAAAGTAT CACCTGCAGA AATAAGTGCT
  R
  CAAAGAAGCT CTGCATAGAT AGATTGCTCA TGGAGCTTCT TCTTTCTCTA GGGCTTTGCT
  CAATAGTGCC CCTAAAAGTA TACAGTTTGA TGCCTCGTCA CATAGTTACA GAACTACAGC
  TATTACTGCA ATCTAACTTT AGAGTGTTTT GCTCCTTCCC CTCCCCTCCC CTCCGCTCCA
  AAAAGGAAAC GCTGGACTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51539016	NES14871290	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38129407					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539016	NES14871290	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146184509 () rs orientation: forward

Symbol	Name	Function Class
Cdk8	cyclin dependent kinase 8	Intron
Gm15739	predicted gene 15739	852 bp upstream
Rr624626	regulatory region 624626	1871 bp distal
Rr624627	regulatory region 624627	1005 bp proximal