rs38104246 SNP Detail

Summary

• ID
  rs38104246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCTCCCTC CCACCCGCCG CACACCTGCT GAGCTAGGAG
  CTGCCGCCGT AACTTCTGCC GCTCCCGGAT CTCCTGCAGG CGGCTATCCA TGCCCCAGCT
  Y
  CGGCTGCTCA CCACCCCGAC AGACTCCGCG CCCGCCAAAA TGCAAATCCA CCTGCCAAAC
  CAGGAAACAC CGGGTCCCGC CCCGCAGAGA TTCTGACCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51023272	NES13907556	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T	T	C	T
ss135764344	ENSMUSSNP1924183	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38104246					SNP	T	T	C	T	C	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023272	NES13907556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	within coordinates
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	mRNA-UTR
Rr397990	regulatory region 397990	within coordinates
Rr584510	regulatory region 584510	within coordinates
Rr584511	regulatory region 584511	84 bp proximal
Tssr35499	transcription start site region 35499	165 bp upstream
Tssr35500	transcription start site region 35500	88 bp downstream
Tssr35501	transcription start site region 35501	157 bp downstream