rs38096580 SNP Detail

Summary

• ID
  rs38096580
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:146186351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCACTCAA GTATCTCAAC
  AAATATTTGT AAGATAAATA CTTTATAGCC AGCAGGATGC AGAAAACACT TCCCAACAGT
  TCTTCAAACC TTTGAAGTAT GGATTAAAAT TGTTTTAAAT TACATTTTCT ATTTATGTTA
  TGTGTGTGGG AGTGACTTGT GTGGTCCTAA ACCAAAAGTT TTATTATAAA ATGTCAGGAA
  M
  CATCATTATA TCTAGAACCA ATTTGGCCTT ACAGAATAAA TACAAGAAGT TCTGCCAAAT
  CTGTAGGTAG ATGTTTTGCC TTTGAGCACT GATGACACCA GACCTATAAT ATATTCTATT
  TTACATTAAT TCCTTTATTT GTTTATATGT CCACTTGTAT TTATCCATGA GGACAGTAGT
  TGCTCCTTGC ATGAATGCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51539013	NES14871280	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38096580					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539013	NES14871280	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146186351 () rs orientation: forward

Symbol	Name	Function Class
Cdk8	cyclin dependent kinase 8	Intron
Gm15739	predicted gene 15739	119 bp downstream
Rr624627	regulatory region 624627	245 bp distal
Rr624628	regulatory region 624628	582 bp proximal