TGAAG GTCATCTTTG CCTCAAATGG R TTTATGATAA TCTTTGTGAG CACAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51273217 | NES13779285 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | G | A | A | G | G |
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs38093976 | SNP | A | A | A | A | A | G | A | A | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51273217 | NES13779285 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr6:34451507 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Bpgm | 2,3-bisphosphoglycerate mutase | 1784 bp upstream | ||||||
Cpgi17283 | CpG island 17283 | 1554 bp proximal | ||||||
Rr399609 | regulatory region 399609 | 1461 bp upstream | ||||||
Rr628315 | regulatory region 628315 | 838 bp distal | ||||||
Rr628316 | regulatory region 628316 | 334 bp distal | ||||||
Rr628317 | regulatory region 628317 | 1145 bp proximal | ||||||
Rr628318 | regulatory region 628318 | 1646 bp proximal | ||||||
Tssr55509 | transcription start site region 55509 | 1714 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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