About   Help   FAQ
rs38093976 SNP Detail
Summary
  • ID
    rs38093976
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:34451507 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGAAG GTCATCTTTG CCTCAAATGG
    R
    TTTATGATAA TCTTTGTGAG CACAG                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51273217 NES13779285 PERLEGEN MM_PANEL2 f SNP A A A A A G A A G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs38093976 SNP A A A A A G A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51273217 NES13779285 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:34451507 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bpgm 2,3-bisphosphoglycerate mutase 1784 bp upstream
Cpgi17283 CpG island 17283 1554 bp proximal
Rr399609 regulatory region 399609 1461 bp upstream
Rr628315 regulatory region 628315 838 bp distal
Rr628316 regulatory region 628316 334 bp distal
Rr628317 regulatory region 628317 1145 bp proximal
Rr628318 regulatory region 628318 1646 bp proximal
Tssr55509 transcription start site region 55509 1714 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory