rs38090138 SNP Detail

Summary

• ID
  rs38090138
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87824288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA AAAGACATAC TTTTCAGAAC
  S
  GAGGACTAAA AAGGGCCTTG TGCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51575534	NES14667435	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38090138					SNP	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575534	NES14667435	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87824288 () rs orientation: forward

Symbol	Name	Function Class
Gm64606	predicted gene, 64606	1444 bp downstream
Hdgf	heparin binding growth factor	849 bp downstream
Rr579572	regulatory region 579572	198 bp proximal
Rr579573	regulatory region 579573	1985 bp proximal
Tssr29851	transcription start site region 29851	1901 bp downstream
Tssr29852	transcription start site region 29852	1886 bp downstream
Tssr29853	transcription start site region 29853	1798 bp downstream
Tssr29854	transcription start site region 29854	1654 bp downstream
Tssr29855	transcription start site region 29855	1469 bp downstream
Tssr29856	transcription start site region 29856	1433 bp downstream
Tssr29857	transcription start site region 29857	1409 bp downstream
Tssr29858	transcription start site region 29858	1378 bp downstream
Tssr29859	transcription start site region 29859	1346 bp downstream
Tssr29860	transcription start site region 29860	1198 bp downstream
Tssr29861	transcription start site region 29861	1176 bp downstream