rs38020359 SNP Detail

Summary

• ID
  rs38020359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42563912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGTGAGG TGTCTATTTG
  TGGTAAAAGC TACATGCTAA GGGAAAATTT CATGCTAAGA GAATAATTCT CAGTAATATT
  ATAAAGACAT ATATACATAT ATATTTGTGT ATACGAATCC ATATCAGCCA CTGCCTTCTT
  GGGAGTTCAG CCTGTTGTAT AAATCCTTTA ACTTCCAGTA ACATAATAGC TTGAGACAGG
  R
  CCTGCCTGTG ATAGTTCATA AGTGGTAGTT TTGCTCTTGC ACAAAGGTTA ACCTGAGCTA
  AGCAAGCGAG TTCTCGATCA CAATATTACT CATATTGACA AAGTATTTGT TGATCACCTA
  CTCTATTTAA ACCACTCAGA CAGGTGATAT TTGCACATTA ATTTTAGGAA TAGCAAAACA
  ATATATGTGG AGCCAATCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631344	NES14833076	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38020359					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631344	NES14833076	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42563912 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			1752 bp downstream
Tssr56047	transcription start site region 56047			1603 bp downstream
Tssr56048	transcription start site region 56048			1007 bp downstream
Tssr56049	transcription start site region 56049			933 bp downstream
Tssr60620	transcription start site region 60620			1225 bp upstream
Tssr60621	transcription start site region 60621			1205 bp upstream
Tssr60622	transcription start site region 60622			1146 bp upstream
Tssr60623	transcription start site region 60623			1097 bp upstream
Tssr60624	transcription start site region 60624			1070 bp upstream
Tssr60625	transcription start site region 60625			997 bp upstream
Tssr60626	transcription start site region 60626			981 bp upstream
Tssr60627	transcription start site region 60627			972 bp upstream
Tssr60628	transcription start site region 60628			806 bp upstream
Tssr60629	transcription start site region 60629			766 bp upstream
Tssr60630	transcription start site region 60630			698 bp upstream
Tssr60631	transcription start site region 60631			656 bp upstream
Tssr60632	transcription start site region 60632			610 bp upstream
Tssr60633	transcription start site region 60633			580 bp upstream
Tssr60634	transcription start site region 60634			571 bp upstream
Tssr60635	transcription start site region 60635			499 bp upstream
Tssr60636	transcription start site region 60636			400 bp upstream
Tssr60637	transcription start site region 60637			136 bp upstream
Tssr60638	transcription start site region 60638			93 bp upstream
Tssr60639	transcription start site region 60639			41 bp upstream
Tssr60640	transcription start site region 60640			199 bp downstream