rs38003579 SNP Detail

Summary

• ID
  rs38003579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123181008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAAAAGTC TTCTGTAAAT TATTTTGACT ATATAGTGTT
  AAGGTATATC TCTTTCAGAC TTAGCTATAT TATTTGATAA TTATGACTGC CGGGACTAGA
  Y
  GTTTATTCAC TGAGCATTTC TTATAGCAAG TACTGTGCTG AGCTCTGGAG TCTATGAAGG
  CTCAAAGATC AAAAAATATA TGAACATGCC GGCTCCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51023250	NES13907513	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	C	T	C		C	T	T	C		T
ss135764386	ENSMUSSNP6623772	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320919498	CHEV_3_123090277	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38003579					SNP	T	C	T	C	T	C	C	C	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023250	NES13907513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123181008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	1291 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	1369 bp upstream
Rr397990	regulatory region 397990	1306 bp downstream
Rr584510	regulatory region 584510	1439 bp distal
Rr584511	regulatory region 584511	761 bp distal
Tssr35499	transcription start site region 35499	1687 bp upstream
Tssr35500	transcription start site region 35500	1366 bp upstream
Tssr35501	transcription start site region 35501	1349 bp upstream