rs37988040 SNP Detail

Summary

• ID
  rs37988040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16717382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTGCCA AAGGCCACCG
  GCAGCGCAGG GGAAGTCTGC ATCTTCAAAC TCTCCTTGGA GCAACCTTGC CTAAGACCTG
  GGAGCCACGA CTACTCAGCT CCAATTCCGT GGCTGACGTG AGTCACTCGC AGGGGGCAGG
  CTGCAGACGG CTGGGCTGGG CAGGGGTCCT CTTGACTGAG TTGGACCAAT TGGGACTATC
  R
  GTAGCCTCAC CTGTGAGGCC TTGTTTTCTC ATCACTCTTG AAAAGAGACT TCAGCATCCT
  GGATCCTTCT GTGGTTTCTC GAGGCAGCTC CACAGCGCAG CAGCGCGCGT ACAGCTGCCT
  CAAGGAGTTG GGCAAAATGG TATTTGGAGT GCAGGACATT GCATTGTTAG AACATGGTTG
  CAAGGCCTTG GAGGTAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51882124	NES14903436	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G	G	A	G	A	G
ss148401930	ENSMUSSNP2180710	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37988040					SNP	A	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882124	NES14903436	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16717382 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	mRNA-UTR
Rr642835	regulatory region 642835	361 bp distal
Tssr64666	transcription start site region 64666	307 bp downstream
Tssr64667	transcription start site region 64667	274 bp downstream