rs37962008 SNP Detail

Summary

• ID
  rs37962008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42563235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTATGCA CATGGATGTG GAAGGTAGAG TTTGATGTCA GGAACATTCC TCATTTCTCT
  TCCACTTTCA TTCTTTAAGG AAAAGTCCCC CAATCAAAGC CAAAGCTTGC TCGATATGGC
  TAGTTTGCTG TCTAACTTGC TCTGAGGATT CCTTCCCTCT GCCTGCTACA GCTGAGTTTA
  Y
  AGATAGGCTA TTATACCCAC TCTACACTTC TGTAGACTCT GGGCATCCTA CTCTGGTTCT
  CTTGCTTGTG TAGTAAGTGC TTTAACTGCT GAACCATCTT CTTAGCCCGT AGCTAATGAT
  CTATTTTAAA AATTCTTGCT CTATTCCTGC TTGGTCACTT TGAAATTTAG GTTTCCTCAC
  CTGGAGGCTC TATTTGTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631356	NES14833069	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37962008					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631356	NES14833069	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42563235 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			1075 bp downstream
Tssr56047	transcription start site region 56047			926 bp downstream
Tssr56048	transcription start site region 56048			330 bp downstream
Tssr56049	transcription start site region 56049			256 bp downstream
Tssr60620	transcription start site region 60620			548 bp upstream
Tssr60621	transcription start site region 60621			528 bp upstream
Tssr60622	transcription start site region 60622			469 bp upstream
Tssr60623	transcription start site region 60623			420 bp upstream
Tssr60624	transcription start site region 60624			393 bp upstream
Tssr60625	transcription start site region 60625			320 bp upstream
Tssr60626	transcription start site region 60626			304 bp upstream
Tssr60627	transcription start site region 60627			295 bp upstream
Tssr60628	transcription start site region 60628			129 bp upstream
Tssr60629	transcription start site region 60629			89 bp upstream
Tssr60630	transcription start site region 60630			21 bp upstream
Tssr60631	transcription start site region 60631			12 bp downstream
Tssr60632	transcription start site region 60632			64 bp downstream
Tssr60633	transcription start site region 60633			90 bp downstream
Tssr60634	transcription start site region 60634			103 bp downstream
Tssr60635	transcription start site region 60635			169 bp downstream
Tssr60636	transcription start site region 60636			274 bp downstream
Tssr60637	transcription start site region 60637			530 bp downstream
Tssr60638	transcription start site region 60638			570 bp downstream
Tssr60639	transcription start site region 60639			621 bp downstream
Tssr60640	transcription start site region 60640			876 bp downstream