rs37899794 SNP Detail

Summary

• ID
  rs37899794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:101041491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCCAG GTCATATCGT
  TTTAATGTTA CTTCCTTGCT AAACTGGAGT CTCCAAAGGT TTTTCCAGCC AGAAGCCTGT
  CTTTTCATAG GTCAACTCAG CCTTACTCCT TCTCTATCTT GGCTCTGCTA CTCAGGGCCT
  CCTGCTTTGT TCCCTGCTAG GGTTTATTAA CTGTGGAGTA GAGGTATGGT CTAAAGTTCC
  Y
  GATTTCTGTT TACGTCTGAC TCGAAGCTTG TTTATCAGAC TTCTCACACC TTAATTATGA
  AACCCAGAGA TGGACTTTGA AATGGAAGCC AAATCTCATT AAAGACTTAA TCACAGGTCT
  TGAAGTCCTG TAATAACTTG TGATCTCCTT GTTTGTCTGT TTCCCTGCCC CCTCTCTGTC
  CCTATGAAAA GCATGTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51390331	NES13730567	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37899794					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51390331	NES13730567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:101041491 () rs orientation: forward

Symbol	Name	Function Class
Gm43948	predicted gene, 43948	within coordinates
Gm43950	predicted gene, 43950	within coordinates
Rr635751	regulatory region 635751	455 bp distal