rs37882504 SNP Detail

Summary

• ID
  rs37882504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42564561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCGGTTG CATCACATAA
  ATATTCTTCT CCCAGAGAGA AGAGATAGTG TGTGTTCACT CTCTGCCTTC TGTACCTTCA
  GCTGTATACC TTTTCATGGG GTTTTCCTGC CACTCTGGCA AAGAGGCTAG GCTTTTAGCC
  ACAGCATATT TGACAGGCCA GCCCCAGGCT TCAAAGAAAG GTGCCAGATT CTTATGCACA
  R
  CCTCAGAGAA CTTCTTCACC CACAGATTCA TCTTGTCTTC ATTGTTTTGA GGAAGGCCAG
  AGAGGGTTCG GTAGTCAGCA AAGACCTGGA TGAATGGCTC CCACCCAAAG CCCTCCTGGA
  GCTGGAAAGA GAAGGACATG AGAGAGTGAC ATATACAACC TGCAAGTCAA CTCCTGAACA
  CACACATAAA ACCACATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631332	NES14833084	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37882504					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631332	NES14833084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42564561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Tssr56048	transcription start site region 56048			1656 bp downstream
Tssr56049	transcription start site region 56049			1582 bp downstream
Tssr60620	transcription start site region 60620			1874 bp upstream
Tssr60621	transcription start site region 60621			1854 bp upstream
Tssr60622	transcription start site region 60622			1795 bp upstream
Tssr60623	transcription start site region 60623			1746 bp upstream
Tssr60624	transcription start site region 60624			1719 bp upstream
Tssr60625	transcription start site region 60625			1646 bp upstream
Tssr60626	transcription start site region 60626			1630 bp upstream
Tssr60627	transcription start site region 60627			1621 bp upstream
Tssr60628	transcription start site region 60628			1455 bp upstream
Tssr60629	transcription start site region 60629			1415 bp upstream
Tssr60630	transcription start site region 60630			1347 bp upstream
Tssr60631	transcription start site region 60631			1305 bp upstream
Tssr60632	transcription start site region 60632			1259 bp upstream
Tssr60633	transcription start site region 60633			1229 bp upstream
Tssr60634	transcription start site region 60634			1220 bp upstream
Tssr60635	transcription start site region 60635			1148 bp upstream
Tssr60636	transcription start site region 60636			1049 bp upstream
Tssr60637	transcription start site region 60637			785 bp upstream
Tssr60638	transcription start site region 60638			742 bp upstream
Tssr60639	transcription start site region 60639			690 bp upstream
Tssr60640	transcription start site region 60640			444 bp upstream