rs37823108 SNP Detail

Summary

• ID
  rs37823108
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42564702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGTTTTGA GGAAGGCCAG AGAGGGTTCG GTAGTCAGCA
  AAGACCTGGA TGAATGGCTC CCACCCAAAG CCCTCCTGGA GCTGGAAAGA GAAGGACATG
  M
  GAGAGTGACA TATACAACCT GCAAGTCAAC TCCTGAACAC ACACATAAAA CCACATGGCG
  GGTTTTAGTT ATAAACCATC CTGTTATGTT GATTTAATTT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631323	NES14833089	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37823108					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631323	NES14833089	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42564702 () rs orientation: forward

Symbol	Name	Function Class
Tcaf3	TRPM8 channel-associated factor 3	Intron
Tssr56048	transcription start site region 56048	1797 bp downstream
Tssr56049	transcription start site region 56049	1723 bp downstream
Tssr60621	transcription start site region 60621	1995 bp upstream
Tssr60622	transcription start site region 60622	1936 bp upstream
Tssr60623	transcription start site region 60623	1887 bp upstream
Tssr60624	transcription start site region 60624	1860 bp upstream
Tssr60625	transcription start site region 60625	1787 bp upstream
Tssr60626	transcription start site region 60626	1771 bp upstream
Tssr60627	transcription start site region 60627	1762 bp upstream
Tssr60628	transcription start site region 60628	1596 bp upstream
Tssr60629	transcription start site region 60629	1556 bp upstream
Tssr60630	transcription start site region 60630	1488 bp upstream
Tssr60631	transcription start site region 60631	1446 bp upstream
Tssr60632	transcription start site region 60632	1400 bp upstream
Tssr60633	transcription start site region 60633	1370 bp upstream
Tssr60634	transcription start site region 60634	1361 bp upstream
Tssr60635	transcription start site region 60635	1289 bp upstream
Tssr60636	transcription start site region 60636	1190 bp upstream
Tssr60637	transcription start site region 60637	926 bp upstream
Tssr60638	transcription start site region 60638	883 bp upstream
Tssr60639	transcription start site region 60639	831 bp upstream
Tssr60640	transcription start site region 60640	585 bp upstream