rs37811282 SNP Detail

Summary

• ID
  rs37811282
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42564614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCACTCTC TGCCTTCTGT
  ACCTTCAGCT GTATACCTTT TCATGGGGTT TTCCTGCCAC TCTGGCAAAG AGGCTAGGCT
  TTTAGCCACA GCATATTTGA CAGGCCAGCC CCAGGCTTCA AAGAAAGGTG CCAGATTCTT
  ATGCACAGCC TCAGAGAACT TCTTCACCCA CAGATTCATC TTGTCTTCAT TGTTTTGAGG
  M
  AGGCCAGAGA GGGTTCGGTA GTCAGCAAAG ACCTGGATGA ATGGCTCCCA CCCAAAGCCC
  TCCTGGAGCT GGAAAGAGAA GGACATGAGA GAGTGACATA TACAACCTGC AAGTCAACTC
  CTGAACACAC ACATAAAACC ACATGGCGGG TTTTAGTTAT AAACCATCCT GTTATGTTGA
  TTTAATTTGT CAGTGGCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631329	NES14833086	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37811282					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631329	NES14833086	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42564614 () rs orientation: forward

Symbol	Name	Function Class
Tcaf3	TRPM8 channel-associated factor 3	Coding-Synonymous
Tssr56048	transcription start site region 56048	1709 bp downstream
Tssr56049	transcription start site region 56049	1635 bp downstream
Tssr60620	transcription start site region 60620	1927 bp upstream
Tssr60621	transcription start site region 60621	1907 bp upstream
Tssr60622	transcription start site region 60622	1848 bp upstream
Tssr60623	transcription start site region 60623	1799 bp upstream
Tssr60624	transcription start site region 60624	1772 bp upstream
Tssr60625	transcription start site region 60625	1699 bp upstream
Tssr60626	transcription start site region 60626	1683 bp upstream
Tssr60627	transcription start site region 60627	1674 bp upstream
Tssr60628	transcription start site region 60628	1508 bp upstream
Tssr60629	transcription start site region 60629	1468 bp upstream
Tssr60630	transcription start site region 60630	1400 bp upstream
Tssr60631	transcription start site region 60631	1358 bp upstream
Tssr60632	transcription start site region 60632	1312 bp upstream
Tssr60633	transcription start site region 60633	1282 bp upstream
Tssr60634	transcription start site region 60634	1273 bp upstream
Tssr60635	transcription start site region 60635	1201 bp upstream
Tssr60636	transcription start site region 60636	1102 bp upstream
Tssr60637	transcription start site region 60637	838 bp upstream
Tssr60638	transcription start site region 60638	795 bp upstream
Tssr60639	transcription start site region 60639	743 bp upstream
Tssr60640	transcription start site region 60640	497 bp upstream