rs37800197 SNP Detail

Summary

• ID
  rs37800197
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:59401286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATTTCA CATCTGAGTG
  TCATGCCTTG TTCATTGAGA TACATGTTGA ATGGATGACT GAAGGAGCCC ATAAAGGAGA
  GAGCACACCA GCCCTGGAGA TCCCCAGTGC AACTGTGGAG AAAAGTGTGC CCTCTGTGTC
  AGAAGCCATT ATTTTGTCAT TCTGTGACTC CATCCCTGGT AGTTATAGGC TTCCCTGTAA
  K
  TTGCAGATTT GTGACAAAAC TCTAACAATG AAGGATAGCT CTGTCTAAAT ACATCTTTTC
  TGGTATATTT CAGGCATAAT CAAGAAAATT TTAGAGGAAC CAATAATTAT GCTGGGAAAG
  TCTTTTGAGA CAACCAATCA CTGAAATTTT AGTGCATCCT GTTGGAAGCT CACTTCCTCT
  CCAACCACAG TTGACCTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51662607	NES14827366	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37800197					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51662607	NES14827366	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:59401286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17493	CpG island 17493	1720 bp proximal
Gprin3	GPRIN family member 3	Intron
Rr631269	regulatory region 631269	414 bp proximal
Rr631270	regulatory region 631270	1983 bp proximal
Tssr61184	transcription start site region 61184	1978 bp downstream