rs37778600 SNP Detail

Summary

• ID
  rs37778600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113411904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCCAAGC TGTGGTCACA
  CTGAGTGGAG AAGCTGAAGT CAGTGCTAAA GAGGCCCGCA CTGATTTGTC CCTGTCTCAG
  GGGACAGAGT CCGCTTCACG CTGGCAGGAG GTGAGTCACA CCTCCTGGTG CTGTGAGGGA
  CCTGAAAGTC ACCTATAGTC CAGAAACTCC ACGGGCAGCC AGACGGTGGA GCCTGCTTTG
  Y
  CCCATGGGCC CTTGAGCAAT AGAGCCCTCC TGAGGTTTAG TGCTGGCCAA GAGAACGTTT
  CTACTGAAGA CCATCTAGGT TTGTGCTCTC CAGTACCATA GCTGCTACCC ACACTGAGCC
  CTTGGCAACA TGACTGATGT GACAAAGGAG CTGACTCTGC ACTTCTATGG AGCCTTAACT
  AATTTAGGTA ACTACTATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51841531	NES14768333	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37778600					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841531	NES14768333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113411904 () rs orientation: forward

Symbol	Name	Function Class
Cidec	cell death-inducing DFFA-like effector c	Intron
Gm52871	predicted gene, 52871	within coordinates
Rr636516	regulatory region 636516	within coordinates
Tssr58211	transcription start site region 58211	37 bp downstream
Tssr62447	transcription start site region 62447	429 bp upstream
Tssr62448	transcription start site region 62448	397 bp upstream
Tssr62449	transcription start site region 62449	173 bp upstream
Tssr62450	transcription start site region 62450	155 bp upstream
Tssr62451	transcription start site region 62451	136 bp upstream
Tssr62452	transcription start site region 62452	805 bp downstream