rs37745535 SNP Detail

Summary

• ID
  rs37745535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:87355473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGAAGCC AAACAAGTTC
  TGGAGACTTC TGCATGCCAC ACAGTCCAGG GGGGTGGGGG TGGGGCTGTG TGAATTACGC
  ATAAGTGAGA ACATGACTTT GTTCAGTTAC TTCAGGAATA ACTTAACTTA ATAGTTATTT
  CTATGACGTG CATGGACCGT TAGAGAAAGT AATACAGAAA TGGGCAAAGC TCTGCCTCCA
  Y
  GGGACACAGT AGAGTGGGAA AATGATTGAG TGACAAATGG CAAATGGGGT CAGACAGGGT
  TCCTGGGCAT CAAGAGGAGC CCTGGGATCC TCCTTTATCA CACATAAGTG TTCCATGTTA
  AAACAAAACA AAACAAAACA AAACAAAACA AAACAAAACA AAACAAAACA AAACACTTCC
  AAAGCATCCT TCAAGCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51741448	NES14797738	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37745535					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51741448	NES14797738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87355473 () rs orientation: forward

Symbol	Name	Function Class
Gkn2	gastrokine 2	Intron
Tssr1924	transcription start site region 1924	859 bp upstream
Tssr57540	transcription start site region 57540	350 bp downstream
Tssr57541	transcription start site region 57541	794 bp upstream
Tssr57542	transcription start site region 57542	872 bp upstream
Tssr61887	transcription start site region 61887	216 bp upstream
Tssr61888	transcription start site region 61888	973 bp downstream