rs37648851 SNP Detail

Summary

• ID
  rs37648851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42564366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGCTGTG TAATTTAATC TCTACCTTAC AAAAGAATTA
  AGATGATTCT AATAACGGGG GTGGTCCCTA AAATTGAATC TTGAATCATT AGGGCTTTTC
  R
  GTTGCATCAC ATAAATATTC TTCTCCCAGA GAGAAGAGAT AGTGTGTGTT CACTCTCTGC
  CTTCTGTACC TTCAGCTGTA TACCTTTTCA TGGGGTTTTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631338	NES14833080	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37648851					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631338	NES14833080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42564366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr56048	transcription start site region 56048			1461 bp downstream
Tssr56049	transcription start site region 56049			1387 bp downstream
Tssr60620	transcription start site region 60620			1679 bp upstream
Tssr60621	transcription start site region 60621			1659 bp upstream
Tssr60622	transcription start site region 60622			1600 bp upstream
Tssr60623	transcription start site region 60623			1551 bp upstream
Tssr60624	transcription start site region 60624			1524 bp upstream
Tssr60625	transcription start site region 60625			1451 bp upstream
Tssr60626	transcription start site region 60626			1435 bp upstream
Tssr60627	transcription start site region 60627			1426 bp upstream
Tssr60628	transcription start site region 60628			1260 bp upstream
Tssr60629	transcription start site region 60629			1220 bp upstream
Tssr60630	transcription start site region 60630			1152 bp upstream
Tssr60631	transcription start site region 60631			1110 bp upstream
Tssr60632	transcription start site region 60632			1064 bp upstream
Tssr60633	transcription start site region 60633			1034 bp upstream
Tssr60634	transcription start site region 60634			1025 bp upstream
Tssr60635	transcription start site region 60635			953 bp upstream
Tssr60636	transcription start site region 60636			854 bp upstream
Tssr60637	transcription start site region 60637			590 bp upstream
Tssr60638	transcription start site region 60638			547 bp upstream
Tssr60639	transcription start site region 60639			495 bp upstream
Tssr60640	transcription start site region 60640			249 bp upstream