rs37609089 SNP Detail

Summary

• ID
  rs37609089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGTTCT CTGTGAGAGA
  GGACGGGTGC CACACTTCTC AAGCAGCAGG CAGGGGAGTT CTTGAAGAAA GGGACAATAT
  TTTACTTGTC AGTAAAAGAA ACACAAATCA ACAGAAGCAA AAGCAATACT TTATTGATTT
  AGTAAATAAG ACAATCTGAG TCTAGTCATG GAGCTTGAGT CACTACCACA TCAAGATTCT
  W
  GAAAAATGTC CTAGGAGACA CCGTTCTTCT TTTTTTTTTT TTAATAGCTT GTCAACTTTT
  ATTTACAGAG TCCCATATGT GTGAAGATAA TGCTAATACA AGACAATTTT ACACTCATAT
  GATTCATAGA TGCCATGATT TTAAAAAGAA ACTCTTTCCC AACTCTGTTT TTTGTTTTGT
  TTTTTTTTTT GTTTTTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51631365	NES14833151	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37609089					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631365	NES14833151	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562243 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm38798	predicted gene, 38798			1756 bp upstream
Rr629347	regulatory region 629347			1502 bp distal
Rr629348	regulatory region 629348			1601 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			83 bp downstream
Tssr56047	transcription start site region 56047			41 bp upstream
Tssr56048	transcription start site region 56048			651 bp upstream
Tssr56049	transcription start site region 56049			701 bp upstream
Tssr60620	transcription start site region 60620			431 bp downstream
Tssr60621	transcription start site region 60621			449 bp downstream
Tssr60622	transcription start site region 60622			495 bp downstream
Tssr60623	transcription start site region 60623			551 bp downstream
Tssr60624	transcription start site region 60624			593 bp downstream
Tssr60625	transcription start site region 60625			661 bp downstream
Tssr60626	transcription start site region 60626			676 bp downstream
Tssr60627	transcription start site region 60627			692 bp downstream
Tssr60628	transcription start site region 60628			836 bp downstream
Tssr60629	transcription start site region 60629			891 bp downstream
Tssr60630	transcription start site region 60630			960 bp downstream
Tssr60631	transcription start site region 60631			1004 bp downstream
Tssr60632	transcription start site region 60632			1056 bp downstream
Tssr60633	transcription start site region 60633			1082 bp downstream
Tssr60634	transcription start site region 60634			1095 bp downstream
Tssr60635	transcription start site region 60635			1161 bp downstream
Tssr60636	transcription start site region 60636			1266 bp downstream
Tssr60637	transcription start site region 60637			1522 bp downstream
Tssr60638	transcription start site region 60638			1562 bp downstream
Tssr60639	transcription start site region 60639			1613 bp downstream
Tssr60640	transcription start site region 60640			1868 bp downstream