rs37553098 SNP Detail

Summary

• ID
  rs37553098
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42563205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTATGCA CATGGATGTG GAAGGTAGAG
  TTTGATGTCA GGAACATTCC TCATTTCTCT TCCACTTTCA TTCTTTAAGG AAAAGTCCCC
  CAATCAAAGC CAAAGCTTGC TCGATATGGC TAGTTTGCTG TCTAACTTGC TCTGAGGATT
  S
  CTTCCCTCTG CCTGCTACAG CTGAGTTTAT AGATAGGCTA TTATACCCAC TCTACACTTC
  TGTAGACTCT GGGCATCCTA CTCTGGTTCT CTTGCTTGTG TAGTAAGTGC TTTAACTGCT
  GAACCATCTT CTTAGCCCGT AGCTAATGAT CTATTTTAAA AATTCTTGCT CTATTCCTGC
  TTGGTCACTT TGAAATTTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51631359	NES14833067	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37553098					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631359	NES14833067	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42563205 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			1045 bp downstream
Tssr56047	transcription start site region 56047			896 bp downstream
Tssr56048	transcription start site region 56048			300 bp downstream
Tssr56049	transcription start site region 56049			226 bp downstream
Tssr60620	transcription start site region 60620			518 bp upstream
Tssr60621	transcription start site region 60621			498 bp upstream
Tssr60622	transcription start site region 60622			439 bp upstream
Tssr60623	transcription start site region 60623			390 bp upstream
Tssr60624	transcription start site region 60624			363 bp upstream
Tssr60625	transcription start site region 60625			290 bp upstream
Tssr60626	transcription start site region 60626			274 bp upstream
Tssr60627	transcription start site region 60627			265 bp upstream
Tssr60628	transcription start site region 60628			99 bp upstream
Tssr60629	transcription start site region 60629			59 bp upstream
Tssr60630	transcription start site region 60630			within coordinates
Tssr60631	transcription start site region 60631			42 bp downstream
Tssr60632	transcription start site region 60632			94 bp downstream
Tssr60633	transcription start site region 60633			120 bp downstream
Tssr60634	transcription start site region 60634			133 bp downstream
Tssr60635	transcription start site region 60635			199 bp downstream
Tssr60636	transcription start site region 60636			304 bp downstream
Tssr60637	transcription start site region 60637			560 bp downstream
Tssr60638	transcription start site region 60638			600 bp downstream
Tssr60639	transcription start site region 60639			651 bp downstream
Tssr60640	transcription start site region 60640			906 bp downstream