rs37407213 SNP Detail

Summary

• ID
  rs37407213
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16716358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGTTTC ATGAGGGTCG
  ACTCATAACT GTAATTTCAG TTCCAGAGGA TCCAATGTCC TCATCTGACC TGCATGGCAT
  CAGGCATGCA TGTGCTACAC AGACATACAA GCAGACAAAA CACTCAGACA TAATATATAA
  AAAGCATTTA AAAAGGAACG ATTTTTAAAA ATAACTTTCC ACCTGTGTAT GTATTTACAT
  K
  GCTCCACCTG TTCTTAGTTT ATTCAGGAAG TATTAATGTT TGTTACTGTC TGTTACAATC
  TGTTGATTTG AACATCAATG CTCAGGCAGG AGTGTTTCCC AGCTGGTAGA TGCTTTCCTG
  CCATGCTAGG AGCCTGGTTT CCATCCTCAG AGCTACAATA GACCAGGCAC TGCTCGCTGT
  AGGCATGTAG TAGCCCTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51882133	NES14903440	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	T	T	G	G	G	T	G	T	G	G
ss148401855	ENSMUSSNP2462646	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37407213					SNP	T	T	G	G	G	T	T	T	G	G	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882133	NES14903440	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16716358 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	650 bp upstream
Rr642834	regulatory region 642834	1627 bp distal
Rr642835	regulatory region 642835	163 bp proximal
Tssr64666	transcription start site region 64666	632 bp upstream
Tssr64667	transcription start site region 64667	740 bp upstream