rs37363339 SNP Detail

Summary

• ID
  rs37363339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:70094293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCACAC TGCTGATGGT
  GAGAGTGAAA TCTGTCCCAG ATCCACTGCC TGTGAAGCGA TCAGGGACCC CAGATTCCCT
  AGTGGATGCC CAGTAAATCA GCAGTTTAGG AGACTGCCCT GGTTTCTGCT GGTACCAGGC
  CAAGTAGTTC TTTTGATTGC TACTATATAA AAGGCTCTGA CTGGACTTGC AGCTCATAGT
  R
  ACCTTCTCTC CAACTGACAC AGCTAGGGAG GATGGAGACT GTGACATCAC AATGTCCCCA
  CAGGTACCTG AAATAAGTAG AAAGTGAACA TGAATACATA CACAAATAGA TTATTATAAC
  AGTTGAAATT TGTCAAAGGT CTTTGTAATG TCATATTGTC AGAGTTATTA TGGAAGTAAT
  ATTACACACT TGCACATAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51681342	NES14824732	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37363339					SNP	A	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51681342	NES14824732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70094293 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv8-30	immunoglobulin kappa chain variable 8-30	Coding-Synonymous
Rr379563	regulatory region 379563	1086 bp upstream
Tssr61309	transcription start site region 61309	322 bp downstream