rs37262005 SNP Detail

Summary

• ID
  rs37262005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42563639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTTCATAA TTAGTATGGC ACAGGCCAAT CCAGCGTTTG
  GTATTTTAGC CGTAATCTAT CTGACATTAA TAATTTTTTT AAGGACAACA GATATAACTT
  Y
  CAGCGAATCA TTCAGTTATT TCGCAAAGGA AAAATGTCTG ATATTTGGTA GGCTGTGTGG
  CCACTGTGTG GCAGAGGTGA GGTGTCTATT TGTGGTAAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51631347	NES14833074	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37262005					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631347	NES14833074	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42563639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			1479 bp downstream
Tssr56047	transcription start site region 56047			1330 bp downstream
Tssr56048	transcription start site region 56048			734 bp downstream
Tssr56049	transcription start site region 56049			660 bp downstream
Tssr60620	transcription start site region 60620			952 bp upstream
Tssr60621	transcription start site region 60621			932 bp upstream
Tssr60622	transcription start site region 60622			873 bp upstream
Tssr60623	transcription start site region 60623			824 bp upstream
Tssr60624	transcription start site region 60624			797 bp upstream
Tssr60625	transcription start site region 60625			724 bp upstream
Tssr60626	transcription start site region 60626			708 bp upstream
Tssr60627	transcription start site region 60627			699 bp upstream
Tssr60628	transcription start site region 60628			533 bp upstream
Tssr60629	transcription start site region 60629			493 bp upstream
Tssr60630	transcription start site region 60630			425 bp upstream
Tssr60631	transcription start site region 60631			383 bp upstream
Tssr60632	transcription start site region 60632			337 bp upstream
Tssr60633	transcription start site region 60633			307 bp upstream
Tssr60634	transcription start site region 60634			298 bp upstream
Tssr60635	transcription start site region 60635			226 bp upstream
Tssr60636	transcription start site region 60636			127 bp upstream
Tssr60637	transcription start site region 60637			126 bp downstream
Tssr60638	transcription start site region 60638			166 bp downstream
Tssr60639	transcription start site region 60639			217 bp downstream
Tssr60640	transcription start site region 60640			472 bp downstream