rs3722403 SNP Detail

Summary

• ID
  rs3722403
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148087076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT CGGTGCTGGA GATCAAACTC
  M
  GGGAGCCAGA GGCATTTGAA AATAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5098705	WI_WGS_4_143361938	WI	MOUSE	f	SNP	C						A
ss37806188	NES09108428	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	C		A		A	C		A	C	C	C		C
ss147989438	ENSMUSSNP2978298	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
ss321416343	CHEV_4_147376728	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3722403					SNP	C	A	C	A	C	C	A	A	C	A	C	A	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806188	NES09108428	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148087076 () rs orientation: forward

Symbol	Name	Function Class
Clcn6	chloride channel, voltage-sensitive 6	1640 bp downstream
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	545 bp downstream
Rr407043	regulatory region 407043	1059 bp distal
Rr604546	regulatory region 604546	1887 bp distal
Rr604547	regulatory region 604547	898 bp distal
Rr604548	regulatory region 604548	1790 bp proximal
Tssr40239	transcription start site region 40239	1978 bp downstream
Tssr40240	transcription start site region 40240	1865 bp downstream
Tssr40241	transcription start site region 40241	1508 bp downstream
Tssr40242	transcription start site region 40242	1281 bp downstream
Tssr40243	transcription start site region 40243	815 bp downstream
Tssr40244	transcription start site region 40244	612 bp downstream
Tssr44568	transcription start site region 44568	544 bp upstream