rs37221080 SNP Detail

Summary

• ID
  rs37221080
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:87355442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGAGGTG GCTACAAAGC
  CAAGTGAGTA CCATTGAAGC CAAACAAGTT CTGGAGACTT CTGCATGCCA CACAGTCCAG
  GGGGGTGGGG GTGGGGCTGT GTGAATTACG CATAAGTGAG AACATGACTT TGTTCAGTTA
  CTTCAGGAAT AACTTAACTT AATAGTTATT TCTATGACGT GCATGGACCG TTAGAGAAAG
  K
  AATACAGAAA TGGGCAAAGC TCTGCCTCCA CGGGACACAG TAGAGTGGGA AAATGATTGA
  GTGACAAATG GCAAATGGGG TCAGACAGGG TTCCTGGGCA TCAAGAGGAG CCCTGGGATC
  CTCCTTTATC ACACATAAGT GTTCCATGTT AAAACAAAAC AAAACAAAAC AAAACAAAAC
  AAAACAAAAC AAAACAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51741451	NES14797737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37221080					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51741451	NES14797737	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87355442 () rs orientation: forward

Symbol	Name	Function Class
Gkn2	gastrokine 2	Intron
Tssr1924	transcription start site region 1924	890 bp upstream
Tssr57540	transcription start site region 57540	319 bp downstream
Tssr57541	transcription start site region 57541	825 bp upstream
Tssr57542	transcription start site region 57542	903 bp upstream
Tssr61887	transcription start site region 61887	185 bp upstream
Tssr61888	transcription start site region 61888	1004 bp downstream