rs37220226 SNP Detail

Summary

• ID
  rs37220226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:81930797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGTGAA GGCTGCATGA
  GGAAGACCTG AATTAGCTCA TAATCCCCAC CCCTGTAACT TAAGCACTGA CGGGGAGTCC
  AGTGCCCTCT TCTGGCCTCT TCAGAAACTT GGACATACAT ACACAAAGAC GTGAATTTAT
  TGAAATCTAT ATTGTATTAC AATCAATAAT TAAATTGTGG AGCTTGCACA TGAATAAACA
  R
  ATGAGTTTCA CAGAGCAGAA CCCAGAAGCT ATTTTAATAT TTAAGAATCA GTATTCTGGT
  TTGAAAGAAC AGTAGTGGGG AGAAGCATTT AGTAAATGAT GCCAGGAGCC AGCTGCCCTC
  TGCACACACC TGGGGCTCAG TGCTTGAGGC AGGAAGGGCG TGTGCTCAAG ACAAACCAAG
  AAGGGAGGGA GGCAGGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51348175	NES13741248	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37220226					SNP	A	A	A	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348175	NES13741248	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81930797 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gcfc2	GC-rich sequence DNA binding factor 2			Intron
				Noncoding-Transcript-Variant
Rr632565	regulatory region 632565			101 bp distal