rs37218487 SNP Detail

Summary

• ID
  rs37218487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42563482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACTCTGG TTCTCTTGCT
  TGTGTAGTAA GTGCTTTAAC TGCTGAACCA TCTTCTTAGC CCGTAGCTAA TGATCTATTT
  TAAAAATTCT TGCTCTATTC CTGCTTGGTC ACTTTGAAAT TTAGGTTTCC TCACCTGGAG
  GCTCTATTTG TATACATACT TTAGCAATGT TTACACATCC TGGAGTTGCA GACATTTATC
  Y
  TCCAACACAG AAATCTAGCA TAAGTTCTGA CCTCAAACTG CAGCATATCT TACATAGATT
  TCATAATTAG TATGGCACAG GCCAATCCAG CGTTTGGTAT TTTAGCCGTA ATCTATCTGA
  CATTAATAAT TTTTTTAAGG ACAACAGATA TAACTTTCAG CGAATCATTC AGTTATTTCG
  CAAAGGAAAA ATGTCTGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51631350	NES14833073	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37218487					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631350	NES14833073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42563482 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			1322 bp downstream
Tssr56047	transcription start site region 56047			1173 bp downstream
Tssr56048	transcription start site region 56048			577 bp downstream
Tssr56049	transcription start site region 56049			503 bp downstream
Tssr60620	transcription start site region 60620			795 bp upstream
Tssr60621	transcription start site region 60621			775 bp upstream
Tssr60622	transcription start site region 60622			716 bp upstream
Tssr60623	transcription start site region 60623			667 bp upstream
Tssr60624	transcription start site region 60624			640 bp upstream
Tssr60625	transcription start site region 60625			567 bp upstream
Tssr60626	transcription start site region 60626			551 bp upstream
Tssr60627	transcription start site region 60627			542 bp upstream
Tssr60628	transcription start site region 60628			376 bp upstream
Tssr60629	transcription start site region 60629			336 bp upstream
Tssr60630	transcription start site region 60630			268 bp upstream
Tssr60631	transcription start site region 60631			226 bp upstream
Tssr60632	transcription start site region 60632			180 bp upstream
Tssr60633	transcription start site region 60633			150 bp upstream
Tssr60634	transcription start site region 60634			141 bp upstream
Tssr60635	transcription start site region 60635			69 bp upstream
Tssr60636	transcription start site region 60636			27 bp downstream
Tssr60637	transcription start site region 60637			283 bp downstream
Tssr60638	transcription start site region 60638			323 bp downstream
Tssr60639	transcription start site region 60639			374 bp downstream
Tssr60640	transcription start site region 60640			629 bp downstream