rs3721785 SNP Detail

Summary

• ID
  rs3721785
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148086955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG TGTGAATGGA GGGTGGGTTA
  H
  GCAGCTGAGA GGAGGAAGGT TTACA                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5098081	WI_WGS_4_143361817	WI	MOUSE	f	SNP	C	A
ss321416342	CHEV_4_147376607	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3721785					SNP	C	A	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148086955 () rs orientation: forward

Symbol	Name	Function Class
Clcn6	chloride channel, voltage-sensitive 6	1761 bp downstream
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	424 bp downstream
Rr407043	regulatory region 407043	938 bp distal
Rr604546	regulatory region 604546	1766 bp distal
Rr604547	regulatory region 604547	777 bp distal
Rr604548	regulatory region 604548	1911 bp proximal
Tssr40239	transcription start site region 40239	1857 bp downstream
Tssr40240	transcription start site region 40240	1744 bp downstream
Tssr40241	transcription start site region 40241	1387 bp downstream
Tssr40242	transcription start site region 40242	1160 bp downstream
Tssr40243	transcription start site region 40243	694 bp downstream
Tssr40244	transcription start site region 40244	491 bp downstream
Tssr44568	transcription start site region 44568	423 bp upstream