rs3721320 SNP Detail

Summary

• ID
  rs3721320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148086932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAT TTCACTCTCT GAGTATGGGC
  R
  AGTGTGAATG GAGGGTGGGT TAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5097614	WI_WGS_4_143361794	WI	MOUSE	f	SNP	G	A
ss147989433	ENSMUSSNP962628	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss321416341	CHEV_4_147376584	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3721320					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148086932 () rs orientation: forward

Symbol	Name	Function Class
Clcn6	chloride channel, voltage-sensitive 6	1784 bp downstream
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	401 bp downstream
Rr407043	regulatory region 407043	915 bp distal
Rr604546	regulatory region 604546	1743 bp distal
Rr604547	regulatory region 604547	754 bp distal
Rr604548	regulatory region 604548	1934 bp proximal
Tssr40239	transcription start site region 40239	1834 bp downstream
Tssr40240	transcription start site region 40240	1721 bp downstream
Tssr40241	transcription start site region 40241	1364 bp downstream
Tssr40242	transcription start site region 40242	1137 bp downstream
Tssr40243	transcription start site region 40243	671 bp downstream
Tssr40244	transcription start site region 40244	468 bp downstream
Tssr44568	transcription start site region 44568	400 bp upstream