rs3720542 SNP Detail

Summary

• ID
  rs3720542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148086755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT TAATTCATGA AAAGGGAACA
  Y
  GAACACACCT TTTCCTGAGG ACAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5096828	WI_WGS_4_143361617	WI	MOUSE	f	SNP	T		C
ss147989427	ENSMUSSNP1540850	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss321416339	CHEV_4_147376407	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3720542					SNP	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148086755 () rs orientation: forward

Symbol	Name	Function Class
Clcn6	chloride channel, voltage-sensitive 6	1961 bp downstream
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	224 bp downstream
Rr407043	regulatory region 407043	738 bp distal
Rr604546	regulatory region 604546	1566 bp distal
Rr604547	regulatory region 604547	577 bp distal
Tssr40239	transcription start site region 40239	1657 bp downstream
Tssr40240	transcription start site region 40240	1544 bp downstream
Tssr40241	transcription start site region 40241	1187 bp downstream
Tssr40242	transcription start site region 40242	960 bp downstream
Tssr40243	transcription start site region 40243	494 bp downstream
Tssr40244	transcription start site region 40244	291 bp downstream
Tssr44568	transcription start site region 44568	223 bp upstream