rs37156939 SNP Detail

Summary

• ID
  rs37156939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAGGGACA ATATTTTACT TGTCAGTAAA AGAAACACAA
  ATCAACAGAA GCAAAAGCAA TACTTTATTG ATTTAGTAAA TAAGACAATC TGAGTCTAGT
  S
  ATGGAGCTTG AGTCACTACC ACATCAAGAT TCTTGAAAAA TGTCCTAGGA GACACCGTTC
  TTCTTTTTTT TTTTTTAATA GCTTGTCAAC TTTTATTTAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51631368	NES14833150	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37156939					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631368	NES14833150	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm38798	predicted gene, 38798			1722 bp upstream
Rr629347	regulatory region 629347			1468 bp distal
Rr629348	regulatory region 629348			1567 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			49 bp downstream
Tssr56047	transcription start site region 56047			75 bp upstream
Tssr56048	transcription start site region 56048			685 bp upstream
Tssr56049	transcription start site region 56049			735 bp upstream
Tssr60620	transcription start site region 60620			465 bp downstream
Tssr60621	transcription start site region 60621			483 bp downstream
Tssr60622	transcription start site region 60622			529 bp downstream
Tssr60623	transcription start site region 60623			585 bp downstream
Tssr60624	transcription start site region 60624			627 bp downstream
Tssr60625	transcription start site region 60625			695 bp downstream
Tssr60626	transcription start site region 60626			710 bp downstream
Tssr60627	transcription start site region 60627			726 bp downstream
Tssr60628	transcription start site region 60628			870 bp downstream
Tssr60629	transcription start site region 60629			925 bp downstream
Tssr60630	transcription start site region 60630			994 bp downstream
Tssr60631	transcription start site region 60631			1038 bp downstream
Tssr60632	transcription start site region 60632			1090 bp downstream
Tssr60633	transcription start site region 60633			1116 bp downstream
Tssr60634	transcription start site region 60634			1129 bp downstream
Tssr60635	transcription start site region 60635			1195 bp downstream
Tssr60636	transcription start site region 60636			1300 bp downstream
Tssr60637	transcription start site region 60637			1556 bp downstream
Tssr60638	transcription start site region 60638			1596 bp downstream
Tssr60639	transcription start site region 60639			1647 bp downstream
Tssr60640	transcription start site region 60640			1902 bp downstream