rs37152294 SNP Detail

Summary

• ID
  rs37152294
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42564646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG GGTTCGGTAG TCAGCAAAGA
  S
  CTGGATGAAT GGCTCCCACC CAAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51631326	NES14833087	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	G	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37152294					SNP	C	C	C	C	C	C	G	C	G	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631326	NES14833087	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42564646 () rs orientation: forward

Symbol	Name	Function Class
Tcaf3	TRPM8 channel-associated factor 3	Coding-NonSynonymous
Tssr56048	transcription start site region 56048	1741 bp downstream
Tssr56049	transcription start site region 56049	1667 bp downstream
Tssr60620	transcription start site region 60620	1959 bp upstream
Tssr60621	transcription start site region 60621	1939 bp upstream
Tssr60622	transcription start site region 60622	1880 bp upstream
Tssr60623	transcription start site region 60623	1831 bp upstream
Tssr60624	transcription start site region 60624	1804 bp upstream
Tssr60625	transcription start site region 60625	1731 bp upstream
Tssr60626	transcription start site region 60626	1715 bp upstream
Tssr60627	transcription start site region 60627	1706 bp upstream
Tssr60628	transcription start site region 60628	1540 bp upstream
Tssr60629	transcription start site region 60629	1500 bp upstream
Tssr60630	transcription start site region 60630	1432 bp upstream
Tssr60631	transcription start site region 60631	1390 bp upstream
Tssr60632	transcription start site region 60632	1344 bp upstream
Tssr60633	transcription start site region 60633	1314 bp upstream
Tssr60634	transcription start site region 60634	1305 bp upstream
Tssr60635	transcription start site region 60635	1233 bp upstream
Tssr60636	transcription start site region 60636	1134 bp upstream
Tssr60637	transcription start site region 60637	870 bp upstream
Tssr60638	transcription start site region 60638	827 bp upstream
Tssr60639	transcription start site region 60639	775 bp upstream
Tssr60640	transcription start site region 60640	529 bp upstream