rs37106446 SNP Detail

Summary

• ID
  rs37106446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCGCCTCCA GGACGCCGAA GATATGATGT CACACGACGA
  GACCCAATGG GGATGTAGTG GTGGTTGAGG GCGAGGAGCC GCTTTTGGCT ATCTTCTTAG
  Y
  GCTTAAAGTC TTTCCTGAAG GGTTAGGCTC GGTTTTTTTG TTTTTTGTTT TTCCTGCTCA
  TAAAAGAAGT TTTTCTTTTT CCCGTTAACC AATTGTCCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51023260	NES13907562	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	C	T	C		T	T		T
ss135764371	ENSMUSSNP6933878	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
ss320919493	CHEV_3_123089024	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37106446					SNP	T	T	C	T	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023260	NES13907562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	38 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	mRNA-UTR
Rr397990	regulatory region 397990	53 bp downstream
Rr584510	regulatory region 584510	186 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	434 bp upstream
Tssr35500	transcription start site region 35500	113 bp upstream
Tssr35501	transcription start site region 35501	96 bp upstream