rs37016501 SNP Detail

Summary

• ID
  rs37016501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCTGAC TGTCCTGGAA
  CTCACTCTGT AGACCAGGCT GGCCTTGAAC TCAGAAATTT GCCTGCCTCT GCCTCCCAAG
  TGCTGGGATT AAAGGCGTGC ACCACCACAC CCAGCCCCAA CTCTGTTTTT GTCATGCATT
  AGAAAAGTGC AGTGATTGGC AGGTTTAATT AAATCTTTAA GCATATGTAG TAAAGTCACT
  R
  GATTCAGCAA GTCAAGGGCT GTGGTTGACC ATTTGTGTAT TCATGCTTAA ATTTGTGCTG
  GGGTATCAGG ATCTCTTGGC TGACAGCCCA TTTCAGCCAT GTAGAGATGA AAGTCAGTTC
  TCAGTAGAAA ATTTTACAAA ACATAAAAAC ATAAAGGATT AGTATATTCA TTCAGATAAG
  GACAGTGGAG ACAGCACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51631362	NES14833065	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37016501					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631362	NES14833065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562715 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr629347	regulatory region 629347			1974 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			555 bp downstream
Tssr56047	transcription start site region 56047			406 bp downstream
Tssr56048	transcription start site region 56048			179 bp upstream
Tssr56049	transcription start site region 56049			229 bp upstream
Tssr60620	transcription start site region 60620			28 bp upstream
Tssr60621	transcription start site region 60621			8 bp upstream
Tssr60622	transcription start site region 60622			23 bp downstream
Tssr60623	transcription start site region 60623			79 bp downstream
Tssr60624	transcription start site region 60624			121 bp downstream
Tssr60625	transcription start site region 60625			189 bp downstream
Tssr60626	transcription start site region 60626			204 bp downstream
Tssr60627	transcription start site region 60627			220 bp downstream
Tssr60628	transcription start site region 60628			364 bp downstream
Tssr60629	transcription start site region 60629			419 bp downstream
Tssr60630	transcription start site region 60630			488 bp downstream
Tssr60631	transcription start site region 60631			532 bp downstream
Tssr60632	transcription start site region 60632			584 bp downstream
Tssr60633	transcription start site region 60633			610 bp downstream
Tssr60634	transcription start site region 60634			623 bp downstream
Tssr60635	transcription start site region 60635			689 bp downstream
Tssr60636	transcription start site region 60636			794 bp downstream
Tssr60637	transcription start site region 60637			1050 bp downstream
Tssr60638	transcription start site region 60638			1090 bp downstream
Tssr60639	transcription start site region 60639			1141 bp downstream
Tssr60640	transcription start site region 60640			1396 bp downstream