rs36969859 SNP Detail

Summary

• ID
  rs36969859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:128644953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTCCCC ACAATGATTC
  CCCTTAATCT CTGTGATTTC TATTGTTATG TGCACATAAA TGACCAACTG CATTTTCTAT
  CTCTATTGCT TTTCTCTAGG AGAGTAAGAT ACGCTGGTTT CCCCGGGTGC ATGCTGAATA
  AAAAATCAGG ATACTAAAAT GAGATACTTT CATCAAAAAT TACTTACAAA CCTAGGATAT
  R
  TGGAGCTGGT TTGTAAGAAT GAGCCCAAAG ATTTTTTTCT TGTTGTTTAA GCATTAAAAA
  AAATATATAC ATAGTGGCAA AAGAAAACTA GCAATAATAC ACAAAAATTC CAAAATTAAA
  AAAAAAATGG CTATTTTGAG GTTAGCCCTT GTGTGAAATG AAAATAAGTT TTCCATCTTC
  AGGAGTCTCT TTTCATTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51619088	NES14653550	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36969859					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51619088	NES14653550	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:128644953 () rs orientation: forward

Symbol	Name	Function Class
Gm43824	predicted gene 43824	within coordinates
Rr497	regulatory region 497	within coordinates
Rr584947	regulatory region 584947	439 bp distal