rs36969171 SNP Detail

Summary

• ID
  rs36969171
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83901164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAACTCA AAACCCGAAA
  GGCAGGCTTC AAAGATAGGA AGGCCCCACT TCCTGCAGGG CAGCTGAGGA CTCCCACTTC
  ACTTCACAGC GCTCCTGGGC TCTTCCACCT CTGCCCCACA CTCACCAGTC ACCTCTGCTC
  CTGAAAAGCT TTTGTTCAAT GGCCTTCCTT GTGCCTGAAG AAACCAGACC TCTCGCTGCA
  W
  GTGGGACTTT ACTTTCAATT AACTATTCGA AAGTGAAATC CTGAAGGAGC AGATTCCAAA
  TAACAAGAGG TGCAGCGGGC AAGTGTTTTG AGATAGTCTC CTTAAGTAGC TCAGGCTGGC
  CCAGAACAGG TCTTAGGCTC TGAGGTGCCA GGATTAGAGA CGTATGTCAC ACACTCTGCA
  GTCATCATTA CTTAATGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51569549	NES14675085	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36969171					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569549	NES14675085	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83901164 () rs orientation: forward

Symbol	Name	Function Class
Rr578944	regulatory region 578944	1453 bp distal
Rr578945	regulatory region 578945	301 bp distal
Rr578946	regulatory region 578946	375 bp distal
Rr578947	regulatory region 578947	183 bp proximal
Rr578948	regulatory region 578948	1403 bp proximal
Tmem131l	transmembrane 131 like	Intron