rs36965002 SNP Detail

Summary

• ID
  rs36965002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87415676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAGGTG TCCACTGAGG
  TGTGAATGCT TTTAGAATCC TCTTACTCGA TAGTGACAAC TGTATATCTC ACTACTGAAT
  CACTTCGATG ACTGCCAGTA AACCGGGACA TTCTCTGGCC ACATCTTCTG ATTGTAAGTT
  ACCTACACAT ATCACTGGGT GGCTCCACCT TCCTCCACCT GCTGGCTGTA CAGAGTCCAG
  Y
  CCAATCACAG GGCTAGTGAC TGAGCATGCA GAATACTCCA CTAGGGGGCG GTAGAGGCTC
  GGGGATTCCC TTCTATAACA CCCTTCCGCT TCTTTTTTCT AAAGATCCAG ACTCCAGTCC
  ACCCAGGGTT TCCCTCACAG TCATTATTCC TCTTTGCATC ATTTTTACCT CTGCTCTAGA
  ACAGGCGCTG GAAGAGCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51577814	NES14674289	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36965002					SNP	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577814	NES14674289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87415676 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397759	regulatory region 397759	1593 bp downstream
Rr397760	regulatory region 397760	within coordinates
Rr579500	regulatory region 579500	1110 bp distal
Rr579501	regulatory region 579501	within coordinates
Rr579502	regulatory region 579502	11 bp distal
Rr579503	regulatory region 579503	34 bp proximal
Rr579504	regulatory region 579504	569 bp proximal
Rr579505	regulatory region 579505	764 bp proximal
Rr579506	regulatory region 579506	794 bp proximal
Rr579507	regulatory region 579507	1070 bp proximal