rs36939089 SNP Detail

Summary

• ID
  rs36939089
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:35979669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTCGGCTG GAATTAATTT TTTAAAATGC AATTCTAGTT
  GTTGTCTAGT TTACAAGAGT CAGTGTTTCA AAATATTAGA ATACCTTCAT GAGCCCAAGT
  S
  CACAAAAGGC AGTTATGTGT GAGTTCAAGG TCAGGCAAGT CTACATAGCA AGTCCCAGGC
  TATCATGGCT ACTTAGTGAG ACTCTGATTC TGATTCAAAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51453742	NES14434661	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36939089					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51453742	NES14434661	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35979669 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcun1d1	defective in cullin neddylation 1 domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr575278	regulatory region 575278			1104 bp distal
Rr575279	regulatory region 575279			394 bp proximal
Rr575280	regulatory region 575280			1555 bp proximal
Tssr33003	transcription start site region 33003			94 bp downstream