rs3693244 SNP Detail

Summary

• ID
  rs3693244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16715725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTTT ACTTGAGTGC
  CTGTGTATGT GTATGTGTGT ATCTATCTAT GTAGGTGCCA GAAGAGACCA GGGAAGGCAT
  CAGAAATCTG AAAGTGAAGT TACAAGTAGT TAGGTTTATT AATTAAGTAA CTAATTTATT
  ATTATTATTA TTATTATTAT TATTATTATT ATTATGTTTT TTTTCCCAGA CAGGATTTCT
  Y
  TGTGTCTTAG CTATCCAAGA ACTCTCTTTG TAGACCAGGC TGGCCTCTAA CTCACAGAGA
  TCCACCTGCG CGTGCCTCCT GAGTGCTGGG ATTAAAGGCA CGTGCCATCA CTGCCCAGGA
  CAAGTAGTTA GGTTTTGAAT ATTTGTTTAT TTAGTGCCAA TCTCACTACA CAGCCGTCAC
  TGGATGGAAC TTGCTTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5069378	WI_WGS_7_12121054	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3693244					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16715725 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	1283 bp upstream
Rr642834	regulatory region 642834	994 bp distal
Rr642835	regulatory region 642835	796 bp proximal
Tssr64666	transcription start site region 64666	1265 bp upstream
Tssr64667	transcription start site region 64667	1373 bp upstream