rs36921492 SNP Detail

Summary

• ID
  rs36921492
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120679623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGAGCC AGAAGCTACA
  TCTAGTCTGA AAGACCAGAA GAAAGCTTTT ATATCTTCGG TGTGATTTTT GTAATGAATA
  AAAAAGGAGA CATTCCCCTC ACCTATATCC AACAGTCAGA GGAAAATGTA AACAGGTGAT
  TTGTGCGTGG TGCTAATAAA AACTTAACAA AGCTTAAAAA GTGAATCCCC ATACAACATA
  K
  CTGGTAAGCA CTCACTAATC TCAAGGCATC GGTTTCACGA TGTACACTCA AAAATTAGCA
  AGGCGTACCA TATGTTTTGA ATGCACAGAC CCCACTAGCC TGTCTTGAAA AGCCCCTGTT
  CACGCTCAAA GGAAACTTGC AAGTTTGAAA AGCAGGAAGT AGCCCCTAGC CTAGATATAC
  AGACTGTAGG ATGGGAAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51608906	NES14656085	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36921492					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608906	NES14656085	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120679623 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583990	regulatory region 583990	1936 bp distal
Rr583992	regulatory region 583992	45 bp proximal
Rr583993	regulatory region 583993	588 bp proximal
Tssr35394	transcription start site region 35394	754 bp downstream