rs36902797 SNP Detail

Summary

• ID
  rs36902797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6095299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTACATGAT TTCAGAGGTT GAGTAGACCT GAACTGAAGA
  CCAGACAAGG GAGCCCTCCC TCGACATCTT GGGGCCAGGG AAGTTGAAGC CATAGGATCA
  R
  AGGAAATGTG GCAAGAAAAA AGGCCAACAT GGACACAGAA CTTAAATAAA AACAGACAGA
  GGAAGTAAGA CAGATATATA CCTGGGGGAG AGGAGGGATT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575716	NES13653313	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36902797					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575716	NES13653313	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6095299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	945 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	447 bp upstream
Gm59262	predicted gene, 59262	833 bp upstream
Rr370438	regulatory region 370438	1039 bp upstream
Rr405816	regulatory region 405816	788 bp downstream
Rr405817	regulatory region 405817	454 bp upstream
Rr543275	regulatory region 543275	829 bp distal
Rr543276	regulatory region 543276	965 bp distal
Rr543277	regulatory region 543277	516 bp proximal
Rr543278	regulatory region 543278	790 bp proximal
Rr543279	regulatory region 543279	1404 bp proximal
Rr543280	regulatory region 543280	1743 bp proximal
Rr543281	regulatory region 543281	1846 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	1307 bp upstream
Tssr154538	transcription start site region 154538	835 bp upstream
Tssr154539	transcription start site region 154539	1360 bp upstream
Tssr154540	transcription start site region 154540	1752 bp upstream
Tssr154541	transcription start site region 154541	1786 bp upstream
Tssr154542	transcription start site region 154542	1812 bp upstream
Tssr157816	transcription start site region 157816	368 bp upstream
Tssr157817	transcription start site region 157817	1679 bp downstream