rs3690075 SNP Detail

Summary

• ID
  rs3690075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101364864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GGTCCGTTCC TGTACACTGC
  Y
  CCATCTGCAG GATGTAGAGC TGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5066181	WI_WGS_4_99280766	WI	MOUSE	f	SNP			C	T
ss45688718	mCV22691124	ABI	CRAMUS_MOUSE	f	SNP	T	C		T	T
ss147123445	ENSMUSSNP3054047	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
ss321230263	CHEV_4_101180272	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3690075					SNP	T	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101364864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14502	CpG island 14502	1227 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	within coordinates
Rr596168	regulatory region 596168	1275 bp distal
Rr596169	regulatory region 596169	1093 bp distal
Rr596170	regulatory region 596170	within coordinates
Rr596171	regulatory region 596171	within coordinates
Rr596172	regulatory region 596172	344 bp proximal
Rr596173	regulatory region 596173	1530 bp proximal
Tssr37997	transcription start site region 37997	172 bp downstream
Tssr37998	transcription start site region 37998	94 bp upstream
Tssr37999	transcription start site region 37999	117 bp upstream
Tssr38000	transcription start site region 38000	188 bp upstream
Tssr38001	transcription start site region 38001	264 bp upstream
Tssr38002	transcription start site region 38002	280 bp upstream
Tssr38003	transcription start site region 38003	432 bp upstream