rs36899085 SNP Detail

Summary

• ID
  rs36899085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70092889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAATATT ATGTAGTCTA
  TAAGGCAGTT TTTCCATGAT ATAACTCCAA AATATGAACT CAATTATTTT CTTAATGAGA
  ATATTGATTG GATTAGTTAG CATATTGTTT ACAGAGAAGC ACAAATTATT ACCCTCTAAA
  AACATTAAAC TCTATTAATT AATATTCAAA AATTGGTAAA AATTGGTAGC TTGCATATTG
  Y
  AATACAAAAT TATATCCAAC ATTAGAGTAC AGAGGCTTTT CAGTCTTCAC AGTTGGAAAG
  CATATAAGAA GACTTTAGAG GGAGAATTGG CCCCAGAAAT AGGGGCAATA AATATCACAT
  TTTCTTTTCT CTATGGATCC TAAATATGCT GTGTGTTAAG TTTGTGTGTG TACATGTACA
  GGCATATGTA TATGTGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51681399	NES14824694	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36899085					SNP	T	T	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51681399	NES14824694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70092889 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv8-30	immunoglobulin kappa chain variable 8-30	1156 bp downstream
Rr379562	regulatory region 379562	1312 bp downstream
Tssr61309	transcription start site region 61309	1726 bp downstream