rs36869939 SNP Detail

Summary

• ID
  rs36869939
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:52521442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCCCCC GGGCTGGCCT
  CCCTGCTGCT CGCTCACATA ACAGCCAGCT GGACAGCTCT GGGGAGGCAA CTCAGAGGCT
  CTTCCTCCGG CCTCTAGCTG GGTGCTGGCC TGAACTTCAC CAGAGGGAAA GAGCTCTTGG
  GAGAGCCTGA CAGGTGCGTG CCAAACTGAA GTTCATTTCA TTCTTTTAGG AGTGTGCTTC
  K
  TAAGTTCTGG AAACTGGGTT GGGCAGCCGG CACTGGTTAG AAAAGGTTCA AAATCATGTT
  TGGGGGAGAG AAACCCCATT AATGACAGGC CTGGCTTTTC TAGAGTGGGG AGTAGAGTCA
  TGGGAAGATG GGAAGGAGGG TGGTGGGACA AAGCTTTCTG CTCTGGGCCT GCAGTGGCTG
  GGCCAGGAGG TCTTTCGTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118294	NES13854495	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36869939					SNP	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118294	NES13854495	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52521442 () rs orientation: forward

Symbol	Name	Function Class
Rr611420	regulatory region 611420	299 bp distal
Rr611421	regulatory region 611421	4 bp distal
Sod3	superoxide dismutase 3, extracellular	Intron
Tssr46168	transcription start site region 46168	177 bp downstream
Tssr46169	transcription start site region 46169	145 bp downstream
Tssr46170	transcription start site region 46170	120 bp downstream